Home

_______________________________
Welcome

Since January 2016, I am a postdoctoral fellow in Ron Do’s lab at the Icahn School of Medicine at Mount Sinai, in New York, USA.
Before joining the Institute for Personalized Medicine at Mount Sinai, I was a BioStatistician at the laboratory of Genomics and metabolic diseases of the Institut Pasteur in Lille, France.
I defended my PhD thesis, “Exploratory Analysis of transcriptomic data: from their visualisation to the integration of external information” on the 4th of September, 2013 in Agrocampus Ouest, Rennes, France.

 

 

_______________________________
News

PLOS ONE

The article “Post-Bariatric Surgery Changes in Quinolinic and Xanthurenic Acid Concentrations Are Associated with Glucose Homeostasis” has just been published

  • [2016,article] bibtex Go to document
    M. Favennec*, B. Hennart*, M. Verbanck*, M. Pigeyre, R. Caiazzo, V. Raverdy, H. Verkindt, A. Leloire, G. J. Guillemin, L. Yengo, D. Allorge, P. Froguel, F. Pattou, and O. Poulain-Godefroy, Post-Bariatric Surgery Changes in Quinolinic and Xanthurenic Acid Concentrations Are Associated with Glucose Homeostasis, PLOS ONE, vol. 11, iss. 6, p. 0158051, 2016.
    @article{favennec_post-bariatric_2016, title = {Post-{Bariatric} {Surgery} {Changes} in {Quinolinic} and {Xanthurenic} {Acid} {Concentrations} {Are} {Associated} with {Glucose} {Homeostasis}},
      volume = {11},
      issn = {1932-6203},
      url = {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158051},
      doi = {10.1371/journal.pone.0158051},
      number = {6},
      urldate = {2016-06-22},
      journal = {PLOS ONE},
      author = {Favennec*, Marie and Hennart*, Benjamin and Verbanck*, Marie and Pigeyre, Marie and Caiazzo, Robert and Raverdy, Violeta and Verkindt, Hélène and Leloire, Audrey and Guillemin, Gilles J. and Yengo, Loïc and Allorge, Delphine and Froguel, Philippe and Pattou, François and Poulain-Godefroy, Odile},
      month = jun, year = {2016},
      keywords = {Diabetes mellitus, Digestive system procedures, Glucose metabolism, Obesity, Serotonin, Surgical and invasive medical procedures, Tryptophan, Weight loss},
      pages = {e0158051}
    }

_______________________________________________________________

First day at Mount Sinai

______________________________________________________________

Vidéo soutenance de thèse

_______________________________________________________________

Statistics and Computing

The article “Regularised PCA to denoise and visualise data” has just been published

  • [2013,article] bibtex Go to document
    M. Verbanck, J. Josse, and F. Husson, Regularised PCA to denoise and visualise data, Statistics and Computing, pp. 1-16, 2013.
    @article{verbanck2013SetC, title = {Regularised {PCA} to denoise and visualise data},
      issn = {0960-3174, 1573-1375},
      doi = {10.1007/s11222-013-9444-y},
      language = {en},
      month = dec, year = {2013},
      journal = {Statistics and Computing},
      author = {Marie Verbanck and Josse, Julie and Husson, François},
      pages = {1--16},
      url = {http://link.springer.com/article/10.1007/s11222-013-9444-y}
    }

_______________________________________________________________

PhD defense, 4th september, Agrocampus Ouest

“Exploratory Analysis of transcriptomic data: from their visualisation to the integration of external information”

Examination committee:

  • Hervé Abdi (University of Texas at Dallas, USA), Rapporteur
  • Philippe Besse (Institut de Mathématiques de Toulouse, France),Rapporteur
  • Sandrine Lagarrigue (INRA/Agrocampus Ouest, Rennes, France), Examinatrice
  • Jean Mosser (CNRS Université de Rennes 1, France), Examinateur
  • Jérôme Pagès (Agrocampus Ouest, Rennes, France), Directeur de thèse
  • Sébastien Lê (Agrocampus Ouest, Rennes, France), Directeur de thèse

 

_______________________________________________________________

Festival Sciences en Cour[t]s 2013

On the 18th of april 2013, will take place the festival Sciences en Cour[t]s in Rennes. Sciences en Cour[t]s is a festival where Ph.D candidates realize very short movies of popular science about their research.

More information at
www.sciences-en-courts.fr

_______________________________________________________________

BMC Bioinformatics

The article “A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data” has just been published

  • [2013,article] bibtex Go to document
    M. Verbanck, S. Lê, and J. Pagès, A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data, BMC Bioinformatics, vol. 14, iss. 1, p. 42, 2013.
    @article{verbanck2013bmc, title = {A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data},
      volume = {14},
      url = {http://www.biomedcentral.com/1471-2105/14/42/abstract},
      language = {en},
      number = {1},
      journal = {{BMC} Bioinformatics},
      author = {Verbanck, Marie and Lê, Sébastien and Pagès, Jérôme},
      month = feb, year = {2013},
      pages = {42},
      }

Open AccessHighly Accessed

_______________________________________________________________

Un article dans la revue “Sciences Ouest”

_______________________________________________________________

StatistiX et le problème de la potion magique

On the occasion of Sciences en Cour[t]s 2012, Cécile Sauder and I won three prices for our very short movie about statistics: the student prize favorite, the public prize favorite and finally the 1st price of the judges panel.

_______________________________________________________________

Festival Sciences en Cour[t]s 2012

On the 5th of april 2012, will take place the festival Sciences en Cour[t]s in Rennes. Sciences en Cour[t]s is a festival where Ph.D candidates realize very short movies of popular science about their research.

I am presenting a very short movie with Cécile Sauder about statistics which is called “StatistiX et le problème de la potion magique”

 

More information at
www.sciences-en-courts.fr

_______________________________________________________________

PhD Graduation Ceremony

I recently took part in the first ever Ph.D Graduation of Agrocampus and cohosted the ceremony with a fellow Ph.D candidate Yuna Blum. Congratulations to the 28 Doctors of 2010-2011.

 

Les commentaires sont fermés.